preprocessCore - A collection of pre-processing functions
A library of core preprocessing routines.
Last updated 4 months ago
infrastructure
16 stars 8.95 score 0 dependencies 218 dependentsaffyio - Tools for parsing Affymetrix data files
Routines for parsing Affymetrix data files based upon file format information. Primary focus is on accessing the CEL and CDF file formats.
Last updated 4 months ago
microarraydataimportinfrastructure
3 stars 6.61 score 1 dependencies 115 dependentsaffyPLM - Methods for fitting probe-level models
A package that extends and improves the functionality of the base affy package. Routines that make heavy use of compiled code for speed. Central focus is on implementation of methods for fitting probe-level models and tools using these models. PLM based quality assessment tools.
Last updated 4 months ago
microarrayonechannelpreprocessingqualitycontrol
6.28 score 24 dependencies 4 dependentsBufferedMatrix - A matrix data storage object held in temporary files
A tabular style data object where most data is stored outside main memory. A buffer is used to speed up access to data.
Last updated 4 months ago
infrastructure
1.38 score 0 dependencies 1 dependentsBufferedMatrixMethods - Microarray Data related methods that utlize BufferedMatrix objects
Microarray analysis methods that use BufferedMatrix objects
Last updated 4 months ago
infrastructure
1.08 score 1 dependencies