preprocessCore - A collection of pre-processing functions
A library of core preprocessing routines.
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infrastructureopenblas
12.42 score 19 stars 225 dependents 2.1k scripts 30k downloadsaffyio - Tools for parsing Affymetrix data files
Routines for parsing Affymetrix data files based upon file format information. Primary focus is on accessing the CEL and CDF file formats.
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microarraydataimportinfrastructurezlib
8.26 score 4 stars 123 dependents 3 scripts 16k downloadsaffyPLM - Methods for fitting probe-level models
A package that extends and improves the functionality of the base affy package. Routines that make heavy use of compiled code for speed. Central focus is on implementation of methods for fitting probe-level models and tools using these models. PLM based quality assessment tools.
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microarrayonechannelpreprocessingqualitycontrolopenblaszlib
7.11 score 4 dependents 1 scripts 2.7k downloadsBufferedMatrix - A matrix data storage object held in temporary files
A tabular style data object where most data is stored outside main memory. A buffer is used to speed up access to data.
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infrastructure
4.56 score 1 dependents 500 downloadsBufferedMatrixMethods - Microarray Data related methods that utlize BufferedMatrix objects
Microarray analysis methods that use BufferedMatrix objects
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infrastructure
2.78 score 470 downloadsALLMLL - A subset of arrays from a large acute lymphoblastic leukemia (ALL) study
This package provides probe-level data for 20 HGU133A and 20 HGU133B arrays which are a subset of arrays from a large ALL study. The data is for the MLL arrays. This data was published in Mary E. Ross, Xiaodong Zhou, Guangchun Song, Sheila A. Shurtleff, Kevin Girtman, W. Kent Williams, Hsi-Che Liu, Rami Mahfouz, Susana C. Raimondi, Noel Lenny, Anami Patel, and James R. Downing (2003) Classification of pediatric acute lymphoblastic leukemia by gene expression profiling Blood 102: 2951-2959
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experimentdatacancerdataleukemiacancerdatamicroarraydatadatapkg
2.30 score 5 scripts